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H1N1猪流感病毒广西分离株HA基因序列分析
作者: 颜健华1  梁丹洁1  李春英1  徐贤坤2  胡巧云2  孙翔翔1  何奇松1  熊 毅2 *  
单位: (1 广西大学动物科技学院  南宁 530005;2 广西动物疫病预防控制中心  南宁 530001)  
关键词: 猪流感病毒  甲型H1N1流感病毒  HA基因  序列分析  同源性  
分类号:S852.659.5
出版年,卷(期):页码:2013 ,44 ( 7 ): 页码:1196-1200
摘要:

【Objective】This study was to determine molecular biology information of HA gene of H1N1 swine influenza virus isolated from Guangxi strains to provide references for monitoring swine flu in Guangxi. 【Method】To analyze HA gene of H1N1 from Genbank, the primer was designed, and then HA genes of  A/swine/Guangxi/1/2011(H1N1) influenza virus were cloned, sequenced and compared via DNASTAR software. A phylogenetic tree was made using MEGA 4.0. 【Result】The results indicated that the length of HA gene was 1701 bp and coded for 566 amino acids. Comparing with classical swine influenza H1N1, human-like H1N1 and Eurasian avian-like H1N1, the nucleotide homologies of HA genes were from 88.0% to 99.6%, from 76.3% to 77.3% and  from 72.9% to 75.4%,respectively. Phylogenetic analysis revealed that the strain of  A/swine/Guangxi/1/2011(H1N1) belonged to classical swine influenza H1N1 lineage and was similar to the strain A/California/04/2009(H1N1), while it did not resemble human-like H1N1 and bird-like H1N1 at all. Amino acid sequence at the HA cleavage site was IPSIQSR↓G, which had characteristics of low-pathogenic influenza viruses. Among the eight glycosylation sites, six sites were located in HAl section and the rest in HA2. Amino acid in protein RBS of Guangxi strains possessed characteristics of both human and swine influenza virus. 【Conclusion】This strain was pandemic(H1N1) 2009 virus and first isolated in Guangxi.

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